Don't delete the maps. 1.9.4.1 servers and 1.9.4 servers both have the same game type (SourceForts 1.9.4), if you delete the maps and join a 1.9.4 server instead of a 1.9.4.1 server, you'll end up with 1.9.4 maps and won't be able to join 1.9.4 servers.
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God.
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